Software  Design.m  Design.m is a software package written in MATHEMATICA in order to design and optimize particle accelerators. The downloadable file Design.zip contains 3 files:  - Design4.m MATHEMATICA source file.  - Design.nb An example test file.  - accelerators.pdf A simple user manual. Download Design.zip (906 KB).  Kinetics.m  Kinetics.m is a software package written in MATHEMATICA in order to obtain and solve the evolution equations of  kinetic processes. The input is in the form of the usual collision diagrams. The downloadable file Kinetics.zip contains 3 files:  - Kinetics.m MATHEMATICA source file.  - KineticsTest.nb An example test file with help menus.  - KineticsPackage.pdf A simple user manual and guide. Download Kinetics.zip (538 KB). GeneticNeworks  GeneticNetworks.m is a Mathematica software package to analyse Genetic Regulatory Networks. It runs in a Windows environment. The downloadable file GeneticNetworks.zip contains 3 files:  - GeneticNetworks.m MATHEMATICA source file.  - GeneticNetworksTest.nb An example test file with help menus.  - GeneticNetworksPackage.pdf A simple user manual and guide.  Download GeneticNetworks.zip (1.56 MB). SupplementaryMaterial Supplementary material to the paper: “Calibration and validation of a genetic regulatory network model describing the production of the gap gene protein Hunchback in Drosophila early development”, by Rui Dilão and Daniele Muraro, Comptes Rendus - Biologies, 333 (2010) 779-788. The compressed file contains the C programs for multi-objective optimization algorithms for parameter calibration of mathematical models. Download SupplementaryMaterials.zip (16.1 MB).  Henon.zip  Henon.exe is a demonstration program to explore the phase space of the Hénon map.  It runs in a Windows environment.  Download Henon.zip (35 KB). BeamBeam.zip  BeamBeam.exe is a demonstration program to explore the phase space of the Beam-Beam map, describing the beam-beam interaction in accelerator physics.  It runs in a Windows environment.  Download BeamBeam.zip (44 KB). Clock Synchronization http://demonstrations.wolfram.com/SynchronizingPendulumClocks/  This simulation shows the anti-phase and the in-phase synchronization of two pendulum clocks.

Software

Design.m
Design.m is a software package written in MATHEMATICA in order to design and optimize particle accelerators. The downloadable file Design.zip contains 3 files:
- Design4.m             MATHEMATICA source file.
- Design.nb              An example test file.
- accelerators.pdf     A simple user manual.

Download Design.zip (906 KB).

Kinetics.m
Kinetics.m is a software package written in MATHEMATICA in order to obtain and solve the evolution equations of
kinetic processes. The input is in the form of the usual collision diagrams. The downloadable file Kinetics.zip contains 3 files:
- Kinetics.m             MATHEMATICA source file.
- KineticsTest.nb              An example test file with help menus.
- KineticsPackage.pdf     A simple user manual and guide.

Download Kinetics.zip (528 KB).

GeneticNeworks
GeneticNetworks.m is a Mathematica software package to analyse Genetic Regulatory Networks.
It runs in a Windows environment. The downloadable file GeneticNetworks.zip contains 3 files:
- GeneticNetworks.m             MATHEMATICA source file.
- GeneticNetworksTest.nb              An example test file with help menus.
- GeneticNetworksPackage.pdf     A simple user manual and guide.
Download GeneticNetworks.zip (1.56 MB).

SupplementaryMaterial
Supplementary material to the paper: “Calibration and validation of a genetic regulatory network model describing the production of the gap gene protein Hunchback in Drosophila early development”, by Rui Dilão and Daniele Muraro, Comptes Rendus - Biologies, 333 (2010) 779-788.

The compressed file contains the C programs for multi-objective optimization algorithms for parameter calibration of mathematical models.

Download SupplementaryMaterials.zip (16.1 MB).

Henon.zip
Henon.exe is a demonstration program to explore the phase space of the Hénon map.
It runs in a Windows environment.
Download Henon.zip (35 KB).

BeamBeam.zip
BeamBeam.exe is a demonstration program to explore the phase space of the Beam-Beam map,

describing the beam-beam interaction in accelerator physics.
It runs in a Windows environment.
Download BeamBeam.zip (44 KB).

Clock Synchronization

http://demonstrations.wolfram.com/SynchronizingPendulumClocks/
This simulation shows the anti-phase and the in-phase synchronization of two pendulum clocks.